The Impact of Artificial Intelligence in Obstetrics and Gynecology
Example of manually blinded ultrasound image. The linked article provides automated methods.
Part 2: Generating a layered pseudo-3D map using R.
Part 2: Generating a layered pseudo-3D map using R The goal of this document is to modify and use a rotate_sf() function written by Stephan Junger and Denis Cohen in…
Performing basic geo spatial analysis with US Census data.
Part 1: Geo-spatial analysis with US Census data The goal of this document is to show basic geo-spatial analysis in R. These plots or similar version of these plots were…
Up Next: Geo-spatial and R a three part series
In the next three blog posts, basic Geo-spatial analysis in R using publicly available data will be performed. This is commonly used to show a correlation between location and potential…
Using python to convert or create composite postscript images of MERS RNA secondary structure
NOTE: This post is written in a Jupyter Notebook using the standard python/Anaconda distribution. The notebook can be found on GitHub and maybe occasionally updated. This is meant to be…
Part 2. Using R to discover ASPE oligo’s: xTAG multiplexing
The goal of this document is to add a “xTAG” or a bead specific nucleotide sequence to the discovered Allele Specific Polymerase Extension (ASPE) oligonucleotides from the last blog. These…
Part 1: Using R and the synxrna package to discover ASPE oligos
The goal of this document is to discover/create Allele Specific Polymerase Extension oligonucleotides (ASPE-oligo's) for the detection of Single Nucleotide Polymorphisms (SNP) or single base mutations associated with disease. There…
Basic SVM using simulated multiplex cytokine data
The goal of this document is to provide a basic structure to use Support Vector Machine (SVM) algorithms to Luminex multi-plex data using the xMAP system. This r markdown document…