Up Next: Geo-spatial and R a three part series
In the next three blog posts, basic Geo-spatial analysis in R using publicly available data will be performed. This is commonly used to show a correlation between location and potential…
Part 2. Using R to discover ASPE oligo’s: xTAG multiplexing
The goal of this document is to add a “xTAG” or a bead specific nucleotide sequence to the discovered Allele Specific Polymerase Extension (ASPE) oligonucleotides from the last blog. These…
Part 1: Using R and the synxrna package to discover ASPE oligos
The goal of this document is to discover/create Allele Specific Polymerase Extension oligonucleotides (ASPE-oligo's) for the detection of Single Nucleotide Polymorphisms (SNP) or single base mutations associated with disease. There…
Basic SVM using simulated multiplex cytokine data
The goal of this document is to provide a basic structure to use Support Vector Machine (SVM) algorithms to Luminex multi-plex data using the xMAP system. This r markdown document…